DiPhyx Stories

Filtered by software_and_tools

Exploring LAMMPS Examples

A Deep Dive into Molecular Dynamics Simulations

Exploring LAMMPS Examples

LAMMPS

Blog Posts About LAMMPS Molecular Dynamics Simulator

LAMMPS

AMBER vs GROMACS

Comparing AMBER and GROMACS: Key strengths and best use cases for molecular dynamics simulations

AMBER vs GROMACS

Samtools Introduction

Mastering Samtools: A Comprehensive Guide

Samtools Introduction

Navigating AMBER Force Fields

Comprehensive Guide to Using Amber Force Fields

Navigating AMBER Force Fields

Guide to Loading Genomes in IGV

Explore how to load genome in IGV and how DiPhyx can optimize your IGV projects

Guide to Loading Genomes in IGV

Energy Minimization in AMBER

Understanding Amber Relaxation and Energy Minimization in AMBER: A Key Step in Molecular Dynamics

Energy Minimization in AMBER

LAMMPS Introduction

Introduction to LAMMPS: Basics and Applications

LAMMPS Introduction

GROMACS Replica Exchange

A Powerful Tool for Molecular Dynamics Simulations

GROMACS Replica Exchange

IGV Introduction

IGV (The Integrative Genomics Viewer): A Comprehensive Guide

IGV Introduction

How to Use FastQC CLI

Optimizing Sequencing Data Quality with FastQC Command Line

How to Use FastQC CLI

Molecule Visualizer Tools

Comprehensive Review of Molecule Visualizer Tools

Molecule Visualizer Tools

AmberMD Simulations

A Comprehensive Guide for Enhanced Molecular Dynamics Simulations

AmberMD Simulations

GROMACS 5

GROMACS 5: A Versatile Tool

GROMACS 5

GROMACS and GPU Scalability

DiPhyx Advances Molecular Dynamics with Enhanced GROMACS GPU Scalability

GROMACS and GPU Scalability

Run JupyterLab Online

Learn How to Run JupyterLab Online Using DiPhyx

Run JupyterLab Online

Molecular Dynamics Software

A comprehensive list of molecular dynamics simulation software

Molecular Dynamics Software

ParaView and Cosmos

Powering Cosmological Discoveries with ParaView

ParaView and Cosmos

ParaView Filters

Understanding Visualization Filters in ParaView

ParaView Filters

ParaView Features

From 3D Visualization to Real-Time Analysis: Uncover ParaView's Best Features

ParaView Features

ParaView Introduction

Discover the Power of Visualization: Dive into ParaView's Extensive Features

ParaView Introduction