DiPhyx Software

Data Science

Data Science Software Packages

Data Science

Life Sciences

Life Sciences Software on DiPhyx

Life Sciences

ParaView

Visualizing Data, Unleashing Insights

ParaView

AmberMD - Run AmberMD on the Cloud

Advanced Molecular Dynamics Simulation

AmberMD - Run AmberMD on the Cloud

OpenFOAM 10

Advanced Open-Source CFD Tool

OpenFOAM 10

CDK

Chemistry Development Kit

CDK

BWA

BWA (Burrows-Wheeler Aligner), Aligning Sequencing Reads to a Reference Genome

BWA

BLAST

Advanced Open-Source CFD Tool

BLAST

GROMACS

A molecular dynamics software for simulating proteins, lipids, and nucleic acids, optimized for performance on CPUs and GPUs.

GROMACS

Cutadapt

Trimming Adapters and Filtering Low-Quality Reads with Conda

Cutadapt

FastQC-CLI

FastQC Command Line Interface

FastQC-CLI

iVar

Bioinformatics Tool for Viral Genomic Analysis

iVar

SU2

Open-source CFD software for aerodynamic simulations, known for flexibility and scalability.

SU2

LAMMPS

Large-scale Atomic/Molecular Massively Parallel Simulator

LAMMPS

ODT

One-Dimensional Turbulence Model

ODT

Uintah-Wasatch

A computational framework for solving complex fluid dynamics and heat transfer problems, supporting large-scale parallel simulations.

Uintah-Wasatch

CFD

Computational Fluid Dynamics Software Packages

CFD

VS Code

Visual Studio Code

VS Code

Jupyter Lab

Unleash your data's potential

Jupyter Lab

Nginx

Reverse Proxy and Web Server

Nginx

Ubuntu

Ubuntu + SSH

Ubuntu

Development

Development Software Packages

Development

Pangolin

Phylogenetic Assignment Tool for SARS-CoV-2 Lineages

Pangolin

Samtools

A toolkit for manipulating and analyzing high-throughput sequencing data in BAM and SAM formats.

Samtools

Ensembl-VEP

A tool for predicting the impact of genetic variants on genes and proteins, widely used in genomics.

Ensembl-VEP