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GenomicsIn preparation
Cutadapt, adaptersoff the ends
Adapter trimming and quality filtering for reads.The step between the sequencer and everything after.
Not on the hub yet The image and its definition are being built and verified.
01Pick a machinecores, memory and a rate per hour
02Set it up oncekept on the volume between runs
03Run it, then stopstopped when the work is done
The application
Trimmed,before anything else
What is left after the adapters go is what you actually sequenced.
Adapters, found and cut
It finds an adapter even when only a part of it is present.
Quality and length
Low-quality ends come off, and short reads are dropped too.
Pairs stay in step
R1 and R2 are trimmed together, so the pairing survives it.
The status
Being built,and verified
When the image and its definition are done, it deploys by name like the rest.
Run Cutadapt on your own machinePick a machine that meets it, and it opens about a minute after you ask.