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What a machine can run
Every workflow you can start today, with the machine it asks for.Already built as containers — nothing to compile, no cluster queue.
Genomics
DNA, RNA and sequencing data — quality control, alignment, variants and lineage assignment.
| Workflow | What it does | Cores | Memory | GPU | Opens |
|---|---|---|---|---|---|
FastQC hub://fastqc | Quality control tool for high throughput sequencing data | 4 | 4 GB | — | Shell |
SAMtools hub://samtools | Read, write and manipulate SAM, BAM and CRAM alignment files | 4 | 4 GB | — | Shell |
Pangolin hub://pangolin | SARS-CoV-2 lineage assignment using the Pango nomenclature | 4 | 8 GB | — | Shell |
BWA | Burrows-Wheeler Aligner for mapping sequencing reads to a reference genome | — | — | — | — |
BLAST | Sequence similarity search against nucleotide and protein databases | — | — | — | — |
Cutadapt | Adapter trimming and quality filtering for sequencing reads | — | — | — | — |
Ensembl VEP | Predicts the effect of genetic variants on genes, transcripts and proteins | — | — | — | — |
iVar | Bioinformatics toolkit for viral amplicon sequencing and consensus calling | — | — | — | — |
IGV | Integrative Genomics Viewer for exploring alignments and annotations | — | — | — | — |
Molecular
Molecular dynamics and chemistry — protein motion, interactions and trajectories.
| Workflow | What it does | Cores | Memory | GPU | Opens |
|---|---|---|---|---|---|
GROMACS hub://gromacs | Molecular dynamics simulation package for biomolecular systems | 4 | 32 GB | NVIDIA | Shell |
PyMOL hub://pymol | Molecular visualization of structures and trajectories | 2 | 4 GB | — | Browser |
AmberMD | Molecular dynamics for proteins, nucleic acids and small molecules | — | — | — | — |
LAMMPS | Large-scale atomic and molecular massively parallel simulator | — | — | — | — |
CDK | Chemistry Development Kit for cheminformatics and structure handling | — | — | — | — |
Structural
Three dimensional structure — cryo-EM processing, prediction and modelling.
| Workflow | What it does | Cores | Memory | GPU | Opens |
|---|---|---|---|---|---|
Scipion hub://scipion | Integrated image processing framework for cryo-electron microscopy | 4 | 64 GB | NVIDIA | Browser |
Simulation
CFD and multiphysics — aerodynamics, heat transfer and combustion.
| Workflow | What it does | Cores | Memory | GPU | Opens |
|---|---|---|---|---|---|
OpenFOAM hub://openfoam | Open source computational fluid dynamics software | 4 | 32 GB | — | Shell |
SU2 hub://su2 | Open-source CFD suite for aerodynamic analysis and optimization | 4 | 32 GB | — | Shell |
ODT | One-Dimensional Turbulence model for turbulent flow and combustion | — | — | — | — |
Uintah-Wasatch | Computational framework for large-scale fluid dynamics and heat transfer | — | — | — | — |
Visualization
Scientific visualisation — post-processing and rendering of large datasets.
| Workflow | What it does | Cores | Memory | GPU | Opens |
|---|---|---|---|---|---|
ParaView hub://paraview | Parallel scientific visualization for large datasets | 4 | 8 GB | — | Browser |
VisIt hub://visit | Interactive visualization and analysis of simulation data | 4 | 8 GB | — | Browser |
Analytics
Interactive computing — notebooks, statistics and machine learning.
| Workflow | What it does | Cores | Memory | GPU | Opens |
|---|---|---|---|---|---|
Jupyter Lab hub://jupyter | Interactive development environment for notebooks, code and data | 4 | 8 GB | — | Browser |
RStudio Server hub://rstudio | Browser-based IDE for R statistical computing and graphics | 4 | 8 GB | — | Browser |
KNIME | Visual data analytics platform for building and running workflows | — | — | — | — |
AI
Large language models — run and serve open models with a chat UI and an API.
| Workflow | What it does | Cores | Memory | GPU | Opens |
|---|---|---|---|---|---|
Ollama hub://ollama | Run open large language models locally | 4 | 8 GB | — | Browser |
Development
Cloud IDEs — full development environments in a browser tab.
| Workflow | What it does | Cores | Memory | GPU | Opens |
|---|---|---|---|---|---|
VS Code Server hub://vscode | Visual Studio Code in the browser, backed by remote compute | 2 | 4 GB | — | Browser |
Coder hub://coder | Self-hosted cloud development environments | 2 | 4 GB | — | Browser |
Infrastructure
Scheduling and services — orchestrate workloads and expose what runs on the machine.
Desktop
Remote Linux desktops — a full GUI streamed to your browser.
| Workflow | What it does | Cores | Memory | GPU | Opens |
|---|---|---|---|---|---|
Ubuntu Desktop hub://ubuntu | Full Ubuntu Linux desktop accessible from your browser | 2 | 4 GB | — | Browser |
Fedora Desktop hub://fedora | Full Fedora Linux desktop accessible from your browser | 2 | 4 GB | — | Browser |
Void Desktop hub://void | Full Void Linux desktop accessible from your browser | 2 | 4 GB | — | Browser |
Browser
Web browsers — a full desktop browser in a remote session.
| Workflow | What it does | Cores | Memory | GPU | Opens |
|---|---|---|---|---|---|
Chromium hub://chromium | Open-source Chromium web browser in a remote desktop session | 2 | 4 GB | — | Browser |
Firefox hub://firefox | Mozilla Firefox web browser in a remote desktop session | 2 | 4 GB | — | Browser |
Vivaldi hub://vivaldi | Feature-rich Vivaldi web browser in a remote desktop session | 2 | 4 GB | — | Browser |
Graphics
Image and vector editing — creative tools streamed to your browser.
| Workflow | What it does | Cores | Memory | GPU | Opens |
|---|---|---|---|---|---|
GIMP hub://gimp | GNU Image Manipulation Program for photo editing and graphics | 2 | 4 GB | — | Browser |
Inkscape hub://inkscape | Vector graphics editor for illustrations and diagrams | 2 | 4 GB | — | Browser |
Messaging
Chat clients — encrypted and cloud messaging in a remote session.
| Workflow | What it does | Cores | Memory | GPU | Opens |
|---|---|---|---|---|---|
Signal hub://signal | Private, encrypted messaging in a remote desktop session | 2 | 4 GB | — | Browser |
Telegram hub://telegram | Telegram messaging client in a remote desktop session | 2 | 4 GB | — | Browser |
What the numbers mean
Cores and memory are what the workflow asks for, so pick a machine that meets them. A row marked Browser opens in a tab once it is running; the rest are driven from a shell on the machine.
dxflow adds nothing to the bill
You pay for the machine and its disk, by the hour, and nothing more. The rows without a reference are run from your own image or an install onto the volume.