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GenomicsIn preparation
IGV, the alignmentin front of you
The Integrative Genomics Viewer.Tracks, coverage and annotations over a reference.
Not on the hub yet The image and its definition are being built and verified.
01Pick a machinecores, memory and a rate per hour
02Set it up oncekept on the volume between runs
03Run it, then stopstopped when the work is done
The application
Look at it,before you trust it
Numbers hide things that one look at the pileup makes obvious.
Reads over a reference
BAM and CRAM tracks, drawn against the reference underneath.
Down to the base
Search a gene or a coordinate, and zoom until the bases show.
Tracks, stacked
Coverage, variants and annotations in the one window at once.
The status
Being built,and verified
When the image and its definition are done, it deploys by name like the rest.
Run IGV on your own machinePick a machine that meets it, and it opens about a minute after you ask.