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GenomicsIn preparation
iVar, from ampliconsto a consensus
Primer trimming, variant calling and consensus building.Built for viral amplicon sequencing, start to end.
Not on the hub yet The image and its definition are being built and verified.
01Pick a machinecores, memory and a rate per hour
02Set it up oncekept on the volume between runs
03Run it, then stopstopped when the work is done
The application
Amplicons in,a genome out
The path a sequenced virus takes from raw reads to one sequence.
Primers come off
It trims the primer regions off reads already aligned to it.
Variants, by frequency
Calls from a pileup, with a threshold you pick for each run.
One consensus genome
The sorted BAM becomes one single sequence, ready to submit.
The status
Being built,and verified
When the image and its definition are done, it deploys by name like the rest.
Run iVar on your own machinePick a machine that meets it, and it opens about a minute after you ask.