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Molecular
PyMOL, wherethe trajectory landed
Molecular visualization on an Ubuntu desktop of your own.Open the structure where it was written, not where you are.
PyMOL 3.12 cores · 4 GBOpens in a browser tab
hub://pymol
$ dxflow workflow create --identity pymol hub://pymol
$ dxflow workflow start pymol --link
01Pick a machinecores, memory and a rate per hour
02Create the workflowpulled from the hub, once
03Run it, then stopstopped when the work is done
The application
Structures,and how they move
Rendering and analysis of 3D structures and trajectories.
Structures and maps
Load a PDB, a density map or a trajectory, and render what you need.
The PyMOL prompt
Drive the whole session from the command line built into the viewer.
Rendering on the CPU
Software OpenGL until a GPU is attached, which big scenes will want.
The session
Viewer and controls,side by side
The panel is kept, so PyMOL's windows are easy to arrange.
6082Browserin the tab, at /vnc.html
5901VNCin a native client
/volumeStoragestructures and sessions
Open it from anywhereStart with --link and the session comes back on an HTTPS address.
Set a password firstVNC_PASSWORD defaults to dxflow, and everyone can read this page.
Run PyMOL on your own machinePick a machine that meets it, and it opens about a minute after you ask.