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Structural
Cryo-EM, from moviesto a 3D model
Scipion on an Ubuntu desktop of your own.RELION, Xmipp, EMAN2 and CTFfind, behind one GUI.
Scipion 3.44 cores · 64 GBNVIDIA GPUOpens in a browser tab
hub://scipion
$ dxflow workflow create --identity scipion hub://scipion
$ dxflow workflow start scipion --link
01Pick a machinecores, memory and a rate per hour
02Create the workflowpulled from the hub, once
03Run it, then stopstopped when the work is done
The application
One project,many packages
RELION, Xmipp, EMAN2 and CTFfind, driven from one place.
The whole pipeline
Imports, motion correction, CTF, picking, classification, refinement.
Plugins on demand
The core is installed; the rest arrive from the plugin manager later.
It asks for a lot
An NVIDIA card, 64 GB and fast storage, because the data is enormous.
The session
The project manager,and all it opens
The panel is kept, so Scipion's windows are easy to arrange.
6082Browserin the tab, at /vnc.html
5901VNCin a native client
/volumeStoragemovies, projects, results
Open it from anywhereStart with --link and the session comes back on an HTTPS address.
Set a password firstVNC_PASSWORD defaults to dxflow, and everyone can read this page.
Run Scipion on your own machinePick a machine that meets it, and it opens about a minute after you ask.